STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnpBMu phage transposase OrfB TnpB_MuSo2. (318 aa)    
Predicted Functional Partners:
tnpA-74
Mu phage transposase OrfA TnpA_MuSo2.
 
 
 0.981
intA
CP4-57-like prophage integrase IntA; Belongs to the 'phage' integrase family.
   
  
 0.972
SO_2660
Mu phage protein of unknown function DUF3164.
 
    0.934
gemA-2
Mu phage host gene modulation protein GemA.
 
    0.918
ner
Mu phage transcriptional regulator Ner.
 
  
 0.909
gpE-2
Mu phage large terminase subunit GpE.
 
    0.836
gpH
Mu phage portal protein GpH.
 
  
 0.833
gpF-2
Mu phage uncharacterized protein GpF.
 
    0.833
SO_2657
Mu phage uncharacterized protein.
  
    0.831
gp26-2
Mu phage uncharacterized protein Gp26.
 
     0.821
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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