STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2658Mu phage uncharacterized protein. (75 aa)    
Predicted Functional Partners:
SO_2656
Mu phage uncharacterized protein.
  
    0.804
SO_2660
Mu phage protein of unknown function DUF3164.
  
    0.799
tnpB
Mu phage transposase OrfB TnpB_MuSo2.
  
    0.785
SO_2663
Mu phage uncharacterized protein.
  
    0.783
SO_2657
Mu phage uncharacterized protein.
  
    0.782
kil-2
Mu phage protein Kil.
       0.773
SO_2661
Mu phage uncharacterized protein.
  
    0.762
SO_4787
Mu phage uncharacterized protein.
       0.737
SO_4788
Mu phage uncharacterized protein.
       0.737
tnpA-74
Mu phage transposase OrfA TnpA_MuSo2.
  
    0.642
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.