Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO_2660Mu phage protein of unknown function DUF3164. (206 aa)    
Predicted Functional Partners:
tnpB
Mu phage transposase OrfB TnpB_MuSo2.
 
    0.934
tnpA-74
Mu phage transposase OrfA TnpA_MuSo2.
 
    0.910
gemA-2
Mu phage host gene modulation protein GemA.
 
    0.894
ner
Mu phage transcriptional regulator Ner.
 
    0.889
SO_2663
Mu phage uncharacterized protein.
 
    0.889
tnpA-8
Mu phage transposase OrfB TnpA_MuSo1b.
 
    0.863
gpE-2
Mu phage large terminase subunit GpE.
 
    0.849
SO_0675
Mu phage major head subunit.
 
    0.848
gpF-2
Mu phage uncharacterized protein GpF.
 
    0.843
gpH
Mu phage portal protein GpH.
 
    0.836
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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