Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO_2678Mu phage uncharacterized protein. (64 aa)    
Predicted Functional Partners:
gpD-2
Mu phage small terminase subunit GpD.
  
    0.810
hipB
Toxin-antitoxin system antidote transcriptional repressor Xre family; Antitoxin component of a type II toxin-antitoxin (TA) system. Neutralizes the toxic effect of cognate toxin HipA; overexpression in wild-type or a hipAB deletion temporarily inhibits cell growth. Binds operator DNA; in the ternary phosphoserine-HipA-HipB-DNA complex the DNA is bent about 125 degrees.
   
    0.785
gpF-2
Mu phage uncharacterized protein GpF.
  
    0.784
e18
Mu phage uncharacterized protein E18.
  
    0.780
gpE-2
Mu phage large terminase subunit GpE.
  
    0.780
gpH
Mu phage portal protein GpH.
  
    0.780
SO_2675
Mu phage protein of unknown function DUF2730.
  
    0.771
com-2
Mu phage Mom translational regulator Com.
  
    0.767
gp26-2
Mu phage uncharacterized protein Gp26.
       0.762
lys
Mu phage endolysin Lys.
       0.756
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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