STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gpE-2Mu phage large terminase subunit GpE. (519 aa)    
Predicted Functional Partners:
gpF-2
Mu phage uncharacterized protein GpF.
 
    0.952
gpH
Mu phage portal protein GpH.
 
    0.951
gp26-2
Mu phage uncharacterized protein Gp26.
 
     0.946
lys
Mu phage endolysin Lys.
 
     0.896
gemA-2
Mu phage host gene modulation protein GemA.
 
    0.868
SO_2660
Mu phage protein of unknown function DUF3164.
 
    0.849
gpI
Mu phage protease GpI.
 
    0.843
gpF
Mu phage minor capsid protein GpF.
 
    0.841
gpT
Mu phage major head subunit GpT.
 
    0.839
tnpB
Mu phage transposase OrfB TnpB_MuSo2.
 
    0.836
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.