Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gpF-2Mu phage uncharacterized protein GpF. (259 aa)    
Predicted Functional Partners:
gpH
Mu phage portal protein GpH.
 
    0.965
gpE-2
Mu phage large terminase subunit GpE.
 
    0.952
gp26-2
Mu phage uncharacterized protein Gp26.
 
     0.946
lys
Mu phage endolysin Lys.
 
     0.906
gpG
Mu phage tail completion protein GpG.
 
  
 0.874
SO_0674
Mu phage peptidase.
 
    0.861
gemA-2
Mu phage host gene modulation protein GemA.
 
    0.854
gpI
Mu phage protease GpI.
 
    0.854
gpT
Mu phage major head subunit GpT.
 
    0.845
SO_2660
Mu phage protein of unknown function DUF3164.
 
    0.843
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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