Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2687Mu phage uncharacterized protein. (186 aa)    
Predicted Functional Partners:
gpI
Mu phage protease GpI.
  
  
 0.921
gpJ
Mu phage baseplate assembly protein GpJ.
  
  
 0.881
J
Lambda phage tail fiber protein J.
   
  
 0.810
SO_0675
Mu phage major head subunit.
   
  
 0.804
cI
Lambda phage lytic gene repressor CI.
      
 0.802
SO_2686
Mu phage uncharacterized protein.
  
    0.786
SO_2688
Mu phage uncharacterized protein.
  
    0.655
gpT
Mu phage major head subunit GpT.
  
    0.620
SO_2691
Mu phage uncharacterized protein.
  
    0.607
SO_2689
Mu phage protein of unknown function DUF1320.
  
    0.583
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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