Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2688Mu phage uncharacterized protein. (219 aa)    
Predicted Functional Partners:
SO_2689
Mu phage protein of unknown function DUF1320.
  
    0.718
gpG-2
Mu phage tail completion protein GpG.
  
    0.711
SO_2691
Mu phage uncharacterized protein.
  
    0.683
SO_2686
Mu phage uncharacterized protein.
  
    0.655
SO_2687
Mu phage uncharacterized protein.
  
    0.655
gpL
Mu phage tail sheath protein GpL.
  
    0.630
gp38
Mu phage uncharacterized protein Gp38.
       0.629
gpM
Mu phage tail tube protein GpM.
  
    0.595
gp41
Mu phage uncharacterized protein Gp41.
       0.593
gpI
Mu phage protease GpI.
  
    0.505
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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