Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gpLMu phage tail sheath protein GpL. (493 aa)    
Predicted Functional Partners:
SO_2689
Mu phage protein of unknown function DUF1320.
 
  
 0.942
gpJ
Mu phage baseplate assembly protein GpJ.
 
  
 0.906
gpN
Mu phage DNA circulation protein GpN.
 
    0.898
gpP
Mu phage baseplate assembly protein GpP.
 
    0.896
gp48
Mu phage phage morphogenesis protein Gp48.
 
  
 0.888
gpV
Mu phage baseplate assembly protein GpV.
 
    0.882
gpI
Mu phage protease GpI.
 
  
 0.875
gpM
Mu phage tail tube protein GpM.
  
  
 0.849
gpT
Mu phage major head subunit GpT.
 
  
 0.842
gpH
Mu phage portal protein GpH.
 
    0.824
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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