STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gp41Mu phage uncharacterized protein Gp41. (119 aa)    
Predicted Functional Partners:
gpM
Mu phage tail tube protein GpM.
       0.794
gpL
Mu phage tail sheath protein GpL.
       0.753
gp38
Mu phage uncharacterized protein Gp38.
  
    0.741
SO_2691
Mu phage uncharacterized protein.
       0.709
SO_2689
Mu phage protein of unknown function DUF1320.
       0.701
gpG-2
Mu phage tail completion protein GpG.
       0.699
nosF
ABC-type copper transport system ATPase component NosF.
   
    0.602
SO_2688
Mu phage uncharacterized protein.
       0.593
gp46
Mu phage uncharacterized protein Gp46.
  
    0.555
gp48
Mu phage phage morphogenesis protein Gp48.
  
    0.547
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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