STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gp42Mu phage tape measure protein Gp42. (553 aa)    
Predicted Functional Partners:
gpN
Mu phage DNA circulation protein GpN.
 
    0.878
gpP
Mu phage baseplate assembly protein GpP.
 
    0.866
gpV
Mu phage baseplate assembly protein GpV.
 
    0.863
SO_2689
Mu phage protein of unknown function DUF1320.
 
    0.857
gpT
Mu phage major head subunit GpT.
 
  
 0.856
gpJ
Mu phage baseplate assembly protein GpJ.
 
    0.832
gp48
Mu phage phage morphogenesis protein Gp48.
 
     0.804
SO_0675
Mu phage major head subunit.
 
  
 0.803
gpI
Mu phage protease GpI.
 
     0.795
gpF-2
Mu phage uncharacterized protein GpF.
 
    0.791
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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