Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gpPMu phage baseplate assembly protein GpP. (359 aa)    
Predicted Functional Partners:
gpG-2
Mu phage tail completion protein GpG.
  
  
 0.984
gpG
Mu phage tail completion protein GpG.
 
  
 0.983
gpJ
Mu phage baseplate assembly protein GpJ.
 
  
 0.978
gpN
Mu phage DNA circulation protein GpN.
 
    0.970
gpV
Mu phage baseplate assembly protein GpV.
 
    0.960
gp48
Mu phage phage morphogenesis protein Gp48.
 
    0.949
gpL
Mu phage tail sheath protein GpL.
 
    0.896
SO_2689
Mu phage protein of unknown function DUF1320.
 
    0.888
gp42
Mu phage tape measure protein Gp42.
 
    0.868
gpI
Mu phage protease GpI.
 
    0.836
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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