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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpPMu phage baseplate assembly protein GpP. (359 aa)    
Predicted Functional Partners:
gpJ
Mu phage baseplate assembly protein GpJ.
 
    0.973
gpN
Mu phage DNA circulation protein GpN.
 
    0.966
gpV
Mu phage baseplate assembly protein GpV.
 
    0.964
gpG-2
Mu phage tail completion protein GpG.
  
  
 0.960
gpG
Mu phage tail completion protein GpG.
 
  
 0.955
gp48
Mu phage phage morphogenesis protein Gp48.
 
    0.950
SO_2689
Mu phage protein of unknown function DUF1320.
 
    0.891
gpL
Mu phage tail sheath protein GpL.
 
    0.889
gp42
Mu phage tape measure protein Gp42.
 
    0.866
gpI
Mu phage protease GpI.
 
    0.837
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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