Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gpVMu phage baseplate assembly protein GpV. (215 aa)    
Predicted Functional Partners:
gpN
Mu phage DNA circulation protein GpN.
 
    0.962
gpP
Mu phage baseplate assembly protein GpP.
 
    0.960
gpJ
Mu phage baseplate assembly protein GpJ.
 
    0.956
gp48
Mu phage phage morphogenesis protein Gp48.
 
    0.952
SO_2689
Mu phage protein of unknown function DUF1320.
 
    0.894
gpL
Mu phage tail sheath protein GpL.
 
    0.882
gp42
Mu phage tape measure protein Gp42.
 
    0.860
gpI
Mu phage protease GpI.
 
    0.833
gp46
Mu phage uncharacterized protein Gp46.
  
    0.829
gpH
Mu phage portal protein GpH.
 
    0.812
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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