STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gpJMu phage baseplate assembly protein GpJ. (355 aa)    
Predicted Functional Partners:
gpP
Mu phage baseplate assembly protein GpP.
 
  
 0.978
gpI
Mu phage protease GpI.
 
  
 0.965
gpN
Mu phage DNA circulation protein GpN.
 
    0.961
gpV
Mu phage baseplate assembly protein GpV.
 
    0.956
gp48
Mu phage phage morphogenesis protein Gp48.
 
    0.954
SO_0033
Peptidoglycan-binding protein.
  
 
 0.918
SO_0675
Mu phage major head subunit.
 
  
 0.911
gpL
Mu phage tail sheath protein GpL.
 
  
 0.906
SO_2687
Mu phage uncharacterized protein.
  
  
 0.881
SO_2689
Mu phage protein of unknown function DUF1320.
 
    0.872
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.