STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2711Predicted lipoprotein. (290 aa)    
Predicted Functional Partners:
SO_2710
DoxD-like inner membrane protein.
       0.615
ykoF
Thiamin/hydroxymethyl pyrimidine-binding protein YkoF.
 
    0.579
pnuT
Thiamin uptake permease PnuT.
 
    0.558
thiK
Predicted thiamine kinase ThiK.
       0.518
gspN
T2aSS secretion system protein GspN.
  
     0.478
SO_2934
Extracellular lipase Pla-1/cef family.
  
    0.434
SO_4539
Extracellular peptidase family S8; Belongs to the peptidase S8 family.
  
     0.422
ydjA
Nitroreductase YdjA.
       0.414
SO_4729
Protein of unknown function DUF2489.
  
     0.402
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.