Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ykoFThiamin/hydroxymethyl pyrimidine-binding protein YkoF. (86 aa)    
Predicted Functional Partners:
pnuT
Thiamin uptake permease PnuT.
 
     0.912
SO_2715
Thiamine-regulated TonB-dependent receptor.
 
     0.901
SO_3905
Predicted outer membrane protein.
  
     0.726
SO_1420
Metal-induced outer membrane porin IfcO family.
  
     0.610
omp35
Outer membrane porin Omp35.
  
     0.605
SO_1557
Outer membrane phosphoporin.
  
     0.599
SO_2711
Predicted lipoprotein.
 
     0.579
thiK
Predicted thiamine kinase ThiK.
       0.549
SO_2007
Putative periplasmic low complexity protein.
  
     0.546
SO_0757
TPR domain lipoprotein.
  
     0.540
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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