Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
deoTNucleoside sugar transporter DeoT. (384 aa)    
Predicted Functional Partners:
pnuR
Transcriptional activator of nicotinamideribose utilization PnuR.
  
    0.770
SO_0076
Outer membrane morn variant repeat-containing protein.
  
     0.645
deoD-3
Purine nucleoside phosphorylase DeoD.
       0.618
SO_0710
P-loop containing nucleoside triphosphate hydrolase superfamily protein.
  
    0.611
SO_3298
Outer membrane beta barrel protein.
   
    0.602
SO_4557
Methyl-accepting chemotaxis protein with Cache sensory domain.
  
     0.567
gbpA
N-acetylglucosamine-binding protein A GbpA; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. Belongs to the GbpA family.
  
    0.557
O
Lambda phage replication protein O.
  
    0.508
SO_0112
Inhibitor of invertebrate-type lysozyme PliI-like family.
  
    0.489
hmuZ
FMN binding heme iron utilization protein HmuZ.
  
    0.475
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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