Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SO_2766Peptidase M28A family. (557 aa)    
Predicted Functional Partners:
SO_0491
Oligopeptidase lipoprotein M13 family.
  
  
 0.910
SO_1674
Short chain dehydrogenase family protein.
   
  
 0.886
SO_1208
Bifunctional diguanylate cyclase/phosphodiesterase.
      
 0.868
wbpP
UDP-GlkcNAc C4 epimerase WbpP.
   
  
 0.821
aguB
N-carbamoyl-putrescine amidase AguB.
      
 0.800
wbpA
UDP-N-acetyl-d-glucosamine 6-dehydrogenase WbpA; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
   
  
 0.762
SO_1822
TonB-dependent receptor.
  
     0.693
proQ
Activator protein ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
   
  
 0.672
SO_1309
TonB-dependent receptor.
  
     0.671
speC
Ornithine decarboxylase SpeC; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
      
 0.667
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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