Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2773Predicted inner membrane protein. (122 aa)    
Predicted Functional Partners:
SO_4429
Putative periplasmic protein.
   
    0.863
SO_0623
Uncharacterized protein.
   
    0.528
SO_0764
Putative periplasmic protein.
   
    0.528
SO_4486
PepSY domain protein.
   
    0.528
SO_4646
Propeptide PepSY amd peptidase M4 domain protein.
   
    0.528
yciA
acyl-CoA thioesterase YciA.
       0.508
fabF
3-oxoacyl-(acyl-carrier-protein) synthase II FabF; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
       0.458
SO_4280
CBS domain containing protein.
   
    0.455
SO_4191
Membrane protein of unknown function DedA family.
   
    0.404
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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