rpmF protein (Shewanella oneidensis) - STRING interaction network

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Score

rpmF

50S ribosomal protein L32 RpmF; Belongs to the bacterial ribosomal protein bL32 family. (56 aa)

Predicted Functional Partners:

rpsU

0.997

rpsT

0.997

rpsF

0.997

rplM

0.997

rpsN

0.996

rpsO

0.996

rpsB

0.996

rpmI

0.996

rpmB

0.996

rplK

0.995

Your Current Organism:

Shewanella oneidensis

NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplK	rplM	SO_0220	SO_3940	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplK	rpmB	SO_0220	SO_4247	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L28 RpmB; Belongs to the bacterial ribosomal protein bL28 family.	0.993
rplK	rpmF	SO_0220	SO_2780	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L32 RpmF; Belongs to the bacterial ribosomal protein bL32 family.	0.995
rplK	rpmI	SO_0220	SO_2301	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L35 RpmI; Belongs to the bacterial ribosomal protein bL35 family.	0.995
rplK	rpsB	SO_0220	SO_1629	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S2 RpsB; Belongs to the universal ribosomal protein uS2 family.	0.998
rplK	rpsF	SO_0220	SO_3930	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S6 RpsF; Binds together with S18 to 16S ribosomal RNA.	0.996
rplK	rpsN	SO_0220	SO_0244	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S14 RpsN; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.997
rplK	rpsO	SO_0220	SO_1207	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S15 RpsO; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.995
rplK	rpsT	SO_0220	SO_3537	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S20 RpsT; Binds directly to 16S ribosomal RNA.	0.989
rplK	rpsU	SO_0220	SO_1288	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S21 RpsU; Belongs to the bacterial ribosomal protein bS21 family.	0.977
rplM	rplK	SO_3940	SO_0220	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.999
rplM	rpmB	SO_3940	SO_4247	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L28 RpmB; Belongs to the bacterial ribosomal protein bL28 family.	0.997
rplM	rpmF	SO_3940	SO_2780	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L32 RpmF; Belongs to the bacterial ribosomal protein bL32 family.	0.997
rplM	rpmI	SO_3940	SO_2301	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L35 RpmI; Belongs to the bacterial ribosomal protein bL35 family.	0.997
rplM	rpsB	SO_3940	SO_1629	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S2 RpsB; Belongs to the universal ribosomal protein uS2 family.	0.999
rplM	rpsF	SO_3940	SO_3930	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S6 RpsF; Binds together with S18 to 16S ribosomal RNA.	0.998
rplM	rpsN	SO_3940	SO_0244	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S14 RpsN; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.996
rplM	rpsO	SO_3940	SO_1207	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S15 RpsO; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.996
rplM	rpsT	SO_3940	SO_3537	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S20 RpsT; Binds directly to 16S ribosomal RNA.	0.996
rplM	rpsU	SO_3940	SO_1288	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S21 RpsU; Belongs to the bacterial ribosomal protein bS21 family.	0.993

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