Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2794Inner membrane protein of unknown function DUF445. (234 aa)    
Predicted Functional Partners:
SO_2792
Protein of unknown function DUF1289.
 
     0.650
ybfF
Putative esterase YbfF.
 
    0.583
SO_2793
Glyoxalase family protein.
  
    0.572
SO_1504
Membrane protein of unknown function DUF3087.
  
     0.557
wzz
Polysaccharide chain length determinant Wzz.
  
     0.502
SO_1060
TIGR02722 family lipoprotein.
  
     0.458
SO_2297
Uncharacterized protein.
 
    0.433
SO_2061
Predicted lipoprotein.
   
    0.421
calB
Coniferyl aldehyde dehydrogenase CalB; Belongs to the aldehyde dehydrogenase family.
   
    0.421
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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