STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2796Protein of unknown function DUF748. (1069 aa)    
Predicted Functional Partners:
glmR
Glucosamine-6-phosphate sensitive transcriptional repressor of lipopolysaccharide biosyntheis GlmR.
  
    0.732
flgE
Flagellar hook protein FlgE.
   
 
 0.609
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.531
skp
Periplasmic chaperone for outer membrane proteins Skp; Belongs to the skp family.
 
 
 0.528
SO_2797
Glutaredoxin.
       0.445
SO_3139
Glycosyl transferase.
  
     0.432
SO_0797
Periplasmic thioredoxin-family protein.
   
    0.421
SO_2795
Glyoxalase family protein.
       0.421
fliF
Flagellar basal-body MS-ring and collar protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
   
   0.414
flgG
Flagellar component of cell-distal portion of basal-body rod FlgG; Belongs to the flagella basal body rod proteins family.
   
   0.411
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.