STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yehUTwo component signal transduction system histidine kinase with GAF sensory domain YehU. (560 aa)    
Predicted Functional Partners:
yehT
Two component signal transduction system response regulator YehT.
 0.999
SO_1565
Magnesium transporter MgtE family.
   
    0.785
envZ
Osmolarity-responsive two component signal transduction system histidine kinase EnvZ.
   
  
 0.664
yecH
Probable metal-binding protein YecH.
       0.533
SO_2407
Glycine radical enzyme YjjI family.
  
     0.517
malR
Transcriptional repressor of maltodextrose utilization MalR.
      
 0.477
SO_4705
Transcriptional repressor Xre family.
      
 0.477
ompR
Osmolarity-responsive two component signal transduction system response regulator OmpR.
      
 0.470
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
   
  
 0.469
SO_4189
Protein of unknown function DUF386.
  
     0.467
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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