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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2839Protein of unknown function DUF3010. (145 aa)    
Predicted Functional Partners:
SO_2254
Periplasmic protein of unknown function DUF2803.
  
    0.647
SO_2391
Protein of unknown function DUF1904.
   
    0.608
SO_2840
Protein of unknown function DUF45.
  
    0.601
SO_3822
Transport protein DMT superfamily.
  
     0.534
SO_2838
ATP-dependent RNA helicase DEAD box family; Belongs to the DEAD box helicase family.
  
    0.526
SO_2902
RDD domain protein.
  
     0.508
SO_1991
Protein of unknown function DUF2570.
  
     0.495
rbgA
50s ribosomal subunit maturation GTPase RbgA; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
    0.481
SO_1420
Metal-induced outer membrane porin IfcO family.
  
     0.478
comFB
Late competence development protein ComFB.
  
     0.471
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.