Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SO_2872Membrane protein of unknown function DUF2069. (124 aa)    
Predicted Functional Partners:
SO_3722
Protein of unknown function DUF2806.
  
     0.757
gspN
T2aSS secretion system protein GspN.
  
     0.751
SO_2914
Protein of unknown function DUF412.
  
    0.745
motX
Flagellar rotation associated protein MotX.
  
     0.739
flgO
Outer membrane lipoprotein required for flagellar motility FlgO.
  
     0.734
SO_2254
Periplasmic protein of unknown function DUF2803.
  
     0.731
SO_1618
Protein of unknown function DUF3549.
  
    0.730
gspL
T2aSSsecretion system inner membrane platform protein GspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.719
arsC
Glutaredoxin-dependent arsenate reductase ArsC.
     
 0.712
SO_4182
ATP-dependent protease La (LON) domain protein.
  
     0.711
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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