STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prkASerine protein kinase PrkA. (644 aa)    
Predicted Functional Partners:
SO_2883
Protein of unknown function DUF444; Belongs to the UPF0229 family.
  
 0.998
SO_2884
SpoVR family protein.
 
  
 0.995
glgA
Glycogen synthase ADP-glucose transglucosylase GlgA.
   
    0.670
katB
Catalase HPII KatB; Belongs to the catalase family.
   
  
 0.602
SO_3888
Protein of unknown function DUF1508; Belongs to the UPF0339 family. Duplicated subfamily.
   
    0.595
dpsA
DNA-binding ferritin-like protein (oxidative damage protectant) DpsA; Belongs to the Dps family.
   
    0.594
SO_0119
Periplasmic protein of unknown function DUF1090.
   
    0.590
SO_0576
Predicted ATPase PhoH family.
   
  
 0.550
ldh
Leucine dehydrogenase Ldh.
   
    0.521
fic
Cell filamentation protein Fic.
   
    0.515
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.