STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2884SpoVR family protein. (508 aa)    
Predicted Functional Partners:
SO_2883
Protein of unknown function DUF444; Belongs to the UPF0229 family.
 
  
 0.997
prkA
Serine protein kinase PrkA.
 
  
 0.995
SO_3888
Protein of unknown function DUF1508; Belongs to the UPF0339 family. Duplicated subfamily.
   
  
 0.672
SO_1787
Inner membrane protein of unknown function DUF1282.
   
  
 0.647
ldh
Leucine dehydrogenase Ldh.
   
    0.580
blc
Lipocalin family lipoprotein Blc; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
   
    0.550
SO_2607
Putative nucleoside transporter.
  
  
 0.478
SO_0576
Predicted ATPase PhoH family.
   
    0.464
exeM
Extracellular endonuclease ExeM.
   
    0.450
exeS
Extracellular nuclease ExeS.
   
    0.450
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.