Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO_2902RDD domain protein. (417 aa)    
Predicted Functional Partners:
SO_2901
3-oxoacyl-(acyl-carrier-protein) synthase III domain protein.
       0.773
SO_0757
TPR domain lipoprotein.
 
    0.714
SO_3866
Site-specific recombinase phage integrase family; Belongs to the 'phage' integrase family.
  
    0.708
SO_3694
ABC-type macrolide family export system MFP component.
  
    0.669
SO_3842
Secreted low complexity protein.
  
     0.651
SO_3822
Transport protein DMT superfamily.
  
     0.640
SO_3722
Protein of unknown function DUF2806.
  
    0.621
SO_0497
Serine/threonine protein kinase.
  
    0.619
SO_4539
Extracellular peptidase family S8; Belongs to the peptidase S8 family.
  
    0.604
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.596
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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