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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
focABidirectional formate transporter FocA. (324 aa)    
Predicted Functional Partners:
can
Beta-class carbonic anhydrase Can; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
  
 0.857
pflB
Pyruvate formate-lyase PflB.
 
  
 0.790
pflA
Pyruvate formate-lyase 1 activating enzyme PflA; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
  
 0.721
dld
Respiratory FAD-dependent D-lactate dehydrogenase Dld.
     
 0.710
lpdA
Dihydrolipoamide dehydrogenase LpdA.
  
 
 0.668
adhE
Aldehyde-alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.606
pdhR
Transcriptional repressor of pyruvate metabolism PdhR.
      
 0.604
fadH
NADP-dependent 24-dienoyl-CoA reductase FadH.
     
 0.597
SO_0988
Molybdopterin-binding oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.537
SO_0760
Ammonium transporter channel family protein.
   
  
 0.509
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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