Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ybbPPutative ABC-type fatty acid export system permease component YbbP. (835 aa)    
Predicted Functional Partners:
ybbA
Putative ABC-type fatty acid export system ATPase component YbbA.
 
 0.997
tesA
Multifunctional thioesterase/protease/lysophospholipase L1 TesA.
 
 
   0.975
attH
Hydroxyneurosporene synthase AttH.
  
  
 0.659
macB
ABC-type macrolide export system bifunctional ATPase and permease component MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.646
SO_3480
Cold-active protein-tyrosine phosphatase.
   
    0.511
SO_3898
Putative quinoprotein dehydrogenase.
  
     0.509
mexE
HAE1 family efflux pump MFP component MexE; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.487
SO_1102
TonB-dependent receptor.
  
    0.484
dinF
DNA damage-inducible multidrug and toxin efflux protein DinF.
      
 0.480
vexR
Transcriptional repressor of multidrug/detergent efflux pump VexR.
      
 0.479
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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