Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_2934Extracellular lipase Pla-1/cef family. (827 aa)    
Predicted Functional Partners:
SO_2597
Outer membrane protein of unknown function DUF1302.
 
    0.803
SO_2596
Putative periplasmic protein of unknown function DUF1329.
 
    0.730
SO_2504
Rhombosortase.
 
    0.691
SO_2595
BNR repeat protein.
 
    0.655
seqA
Negative regulator of DNA replication SeqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.652
SO_1829
Putative Zn-dependent protease associated with TonB2 energy transduction system.
 
     0.649
flgO
Outer membrane lipoprotein required for flagellar motility FlgO.
  
    0.615
SO_0757
TPR domain lipoprotein.
  
     0.610
sohB
Inner membrane anchored endopeptidase SohB.
       0.604
SO_3722
Protein of unknown function DUF2806.
  
     0.602
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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