Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
JLambda phage tail fiber protein J. (1341 aa)    
Predicted Functional Partners:
I
Lambda phage tail assembly protein I.
 
   0.997
H
Lambda phage tail length tape meausure protein H.
 
   0.978
L
Lambda phage minor tail protein L.
 
   0.977
K
Lambda phage tail assembly protein K.
  
 0.973
M
Lambda phage minor tail protein M.
  
   0.956
cI
Lambda phage lytic gene repressor CI.
  
  
 0.842
gpI
Mu phage protease GpI.
  
  
 0.815
SO_0675
Mu phage major head subunit.
  
  
 0.812
SO_2687
Mu phage uncharacterized protein.
   
  
 0.810
gpJ
Mu phage baseplate assembly protein GpJ.
   
  
 0.807
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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