Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2950Lambda phage uncharacterized protein. (219 aa)    
Predicted Functional Partners:
L
Lambda phage minor tail protein L.
  
    0.838
H
Lambda phage tail length tape meausure protein H.
  
    0.804
SO_2951
Lambda phage protein of known function.
  
    0.778
M
Lambda phage minor tail protein M.
  
    0.762
K
Lambda phage tail assembly protein K.
  
    0.714
SO_0680
Mu phage tape measure protein.
  
    0.521
SO_2954
Lambda phage uncharacterized protein.
  
    0.514
SO_2946
Lambda phage protein with carbohydrate-binding module.
  
    0.477
SO_2947
Lambda phage protein of known function.
  
    0.476
gpP
Mu phage baseplate assembly protein GpP.
  
    0.445
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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