Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2962Lambda phage helical domain protein. (94 aa)    
Predicted Functional Partners:
SO_2961
Lambda phage head-tail connector protein HK97-gp6 family.
  
    0.733
SO_2957
Lambda phage protein of unknown function DUF3168.
  
    0.731
SO_2960
Lambda phage phage head-tail joining protein.
  
    0.728
SO_2958
Lambda phage protein HK97-gp10 family.
  
    0.719
SO_2959
Lambda phage uncharacterized protein.
       0.714
SO_2963
Lambda phage major capsid protein.
  
    0.613
SO_2964
Lambda phage head maturation protease.
  
    0.561
B
Lambda phage portal protein B.
  
    0.557
A
Lambda phage terminase A.
  
    0.543
SO_2969
Lambda phage endonuclease HNH family.
  
    0.539
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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