Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2966Lambda phage uncharacterized protein. (53 aa)    
Predicted Functional Partners:
SO_2974
Lambda phage pyridoxal phosphate dependent enzyme.
  
  
 0.957
bfe
Multidrug and toxin efflux protein MATE family; Flavin adenine dinucleotide (FAD) transporter that facilitates export of flavin electron shuttles.
      
 0.802
SO_2964
Lambda phage head maturation protease.
  
    0.773
B
Lambda phage portal protein B.
  
    0.773
A
Lambda phage terminase A.
       0.773
SO_2970
Lambda phage uncharacterized protein.
  
    0.769
SO_2969
Lambda phage endonuclease HNH family.
  
    0.762
S
Lambda phage holin S.
       0.762
SO_2963
Lambda phage major capsid protein.
       0.757
SO_2962
Lambda phage helical domain protein.
       0.533
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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