Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLambda phage holin S. (89 aa)    
Predicted Functional Partners:
SO_1507
C-terminal Bar domain-containing protein.
      
 0.970
sltY
Soluble lytic murein transglycosylase SltY.
      
 0.952
ybgF
TolA energy-transducing system periplasmic component YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
      
 0.837
SO_2969
Lambda phage endonuclease HNH family.
       0.773
SO_2970
Lambda phage uncharacterized protein.
       0.773
SO_2964
Lambda phage head maturation protease.
       0.762
B
Lambda phage portal protein B.
       0.762
SO_2966
Lambda phage uncharacterized protein.
       0.762
A
Lambda phage terminase A.
       0.762
SO_2963
Lambda phage major capsid protein.
       0.746
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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