STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
croLambda phage transcriptional repressor of early genes Cro. (75 aa)    
Predicted Functional Partners:
cI
Lambda phage lytic gene repressor CI.
     
 0.897
SO_0675
Mu phage major head subunit.
   
  
 0.742
gp26-2
Mu phage uncharacterized protein Gp26.
      
 0.737
cII
Lambda phage phage regulatory protein CII.
  
    0.721
gpI
Mu phage protease GpI.
   
  
 0.720
SO_2986
Lambda phage uncharacterized protein.
  
    0.718
SO_2987
Lambda phage uncharacterized protein.
  
    0.717
SO_2687
Mu phage uncharacterized protein.
   
  
 0.716
gpJ
Mu phage baseplate assembly protein GpJ.
   
  
 0.716
J
Lambda phage tail fiber protein J.
   
  
 0.715
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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