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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cILambda phage lytic gene repressor CI. (272 aa)    
Predicted Functional Partners:
cro
Lambda phage transcriptional repressor of early genes Cro.
     
 0.897
SO_0675
Mu phage major head subunit.
  
   
 0.798
gpI
Mu phage protease GpI.
  
  
 0.793
gpJ
Mu phage baseplate assembly protein GpJ.
  
   
 0.792
J
Lambda phage tail fiber protein J.
  
  
 0.787
SO_0641
Mu phage bifunctional transcriptional repressor.
  
   
 0.753
SO_2687
Mu phage uncharacterized protein.
      
 0.732
C
Mu phage transcriptional regulator Cro/CI family C.
  
  
 0.711
SO_2991
Lambda phage lipoprotein.
       0.709
SO_2992
Lambda phage protein of unknown function.
  
    0.645
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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