STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xisLambda phage DNA excisionase Xis. (70 aa)    
Predicted Functional Partners:
dusA
tRNA2fMet-dihydrouridine21 synthase DusA; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
      
 0.910
SO_3010
Lambda phage uncharacterized protein.
  
    0.907
alpA
Mu phage lytic protein AlpA.
      
 0.878
intA
CP4-57-like prophage integrase IntA; Belongs to the 'phage' integrase family.
   
  
 0.876
rumB
23S rRNA (uracil747-C5)-methyltransferase RumB; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.
      
 0.841
SO_3002
Lambda phage uncharacterized protein.
  
    0.815
SO_3007
Lambda phage uncharacterized protein.
  
    0.813
SO_2999
Lambda phage protein of unknown function DUF1317.
  
    0.807
pabA
Para-aminobenzoate synthase glutamine amidotransferase subunit PabA.
      
 0.800
dam-2
Lambda phage type II restriction-modification system DNA N-6-adenine-methyltransferase Dam.
  
    0.787
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.