STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3025Periplasmic siderophore cleavage esterase IroE family. (344 aa)    
Predicted Functional Partners:
SO_3062
Predicted inner membrane protein.
   
  
 0.807
SO_1580
TonB-dependent haem/haemoglobin receptor.
  
  
 0.753
SO_1190
Putative periplasmic CbiK superfamily protein.
  
  
 0.737
SO_2280
drug:H+ antiporter DHA1 family.
   
  
 0.734
SO_3063
Cation:alanine/glycine transporter AGCS family.
   
  
 0.731
pubC
NTP-dependent putrebactin synthetase PubC.
   
  
 0.729
SO_1188
Inner membrane protein with PepSY TM helix.
   
  
 0.714
SO_3100
Uncharacterized protein.
  
    0.673
SO_0762
Isochorismate hydrolase family protein.
  
    0.669
SO_4543
Putative alpha-dextrin endo-1 6-alpha-glucosidase.
  
    0.669
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.