STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciLProtein of unknown function YciL. (99 aa)    
Predicted Functional Partners:
ispZ
Intracellular septation protein IspZ; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
    0.810
pubA
Putrescine monooxygenase PubA.
  
  
 0.777
xth
Exodeoxyribonuclease III Xth.
  
    0.775
SO_3062
Predicted inner membrane protein.
   
  
 0.579
SO_3025
Periplasmic siderophore cleavage esterase IroE family.
   
  
 0.571
tatA
Twin arginine protein translocase system protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
    0.508
bioH
Biotin biosynthesis carboxylesterase BioH; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.
  
    0.504
pubC
NTP-dependent putrebactin synthetase PubC.
  
  
 0.503
putA
TonB-dependent ferric putrebactin siderophore receptor PutA.
  
  
 0.502
pubB
N-hydroxyputrescine-succinyl CoA transferase PubB.
  
  
 0.489
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.