Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
yciLProtein of unknown function YciL. (99 aa)    
Predicted Functional Partners:
pubA
Putrescine monooxygenase PubA.
  
  
 0.842
ispZ
Intracellular septation protein IspZ; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
    0.837
xth
Exodeoxyribonuclease III Xth.
  
    0.773
SO_4516
TonB-dependent siderophore receptor.
   
  
 0.695
SO_3062
Predicted inner membrane protein.
   
  
 0.671
SO_3025
Periplasmic siderophore cleavage esterase IroE family.
   
  
 0.669
putA
TonB-dependent ferric putrebactin siderophore receptor PutA.
  
  
 0.615
tatA
Twin arginine protein translocase system protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
    0.575
gmhA
Phosphoheptose isomerase GmhA; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
   
    0.515
bioH
Biotin biosynthesis carboxylesterase BioH; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.
  
    0.507
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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