Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3058Flavocytochrome c flavin subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (517 aa)    
Predicted Functional Partners:
SO_3056
Flavocytochrome c heme submit.
  
 
  0.957
SO_1414
Flavocytochrome c flavin subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
0.926
SO_3623
Flavocytochrome c heme submit.
  
 
  0.907
SO_1413
Flavocytochrome c heme submit.
   
 
  0.906
nadA
Quinolinate synthetase NadA; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
  
 
 0.892
SO_3331
Protein with CobQ/CobB/MinD/ParA nucleotide binding domain.
  
    0.870
nadC
Nicotinate-nucleotide pyrophosphorylase NadC; Belongs to the NadC/ModD family.
  
  
 0.823
sye3
NAD(P)H:flavin oxidoreductase Sye3.
 
 
    0.740
SO_1419
Predicted FMN-binding domain-containing lipoprotein.
  
    0.713
SO_3057
Phenylalanine/histidine ammonia-lyase family protein.
  
    0.667
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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