STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3063Cation:alanine/glycine transporter AGCS family. (495 aa)    
Predicted Functional Partners:
putA
TonB-dependent ferric putrebactin siderophore receptor PutA.
   
  
 0.836
pubB
N-hydroxyputrescine-succinyl CoA transferase PubB.
   
  
 0.808
SO_4743
TonB-dependent siderophore receptor.
   
  
 0.804
SO_3025
Periplasmic siderophore cleavage esterase IroE family.
      
 0.799
SO_1190
Putative periplasmic CbiK superfamily protein.
   
  
 0.785
SO_1580
TonB-dependent haem/haemoglobin receptor.
      
 0.753
SO_4712
ABC-type transporter ATPase component.
   
  
 0.712
SO_2426
Two component signal transduction system response regulator.
   
  
 0.697
pubA
Putrescine monooxygenase PubA.
   
  
 0.680
SO_2045
Cation efflux protein CDF family.
     
 0.673
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.