STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimVType IV pilus assembly protein FimV. (1110 aa)    
Predicted Functional Partners:
flhG
Flagellar polar localization control system FlhF inhibitory ATPase FlhG.
  
   
 0.836
truA
tRNA pseudouridine38-40 synthase TruA; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.804
flhF
Flagellar polar localization control system flagellar assembly determinant GTPase FlhF.
  
   
 0.777
pilQ
Type IV pilus secretin PilQ.
  
  
 0.770
SO_2533
Periplasmic protein of unknown function DUF3108.
  
 
 
 0.756
pilN
Type IV pilus biogenesis protein PilN.
  
  
 0.721
pilB
Type IV pilus assembly ATPase PilB.
      
 0.716
SO_2197
Diguanylate cyclase.
   
  
 0.709
SO_0796
Diguanylate cyclase.
      
 0.707
SO_0928
Diguanylate cyclase.
      
 0.707
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.