STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3083Zn-dependent peptidase subfamily M16A; Belongs to the peptidase M16 family. (929 aa)    
Predicted Functional Partners:
sixA
Phosphohistidine phosphatase SixA; Belongs to the phosphoglycerate mutase family.
 
     0.644
flgT
Flagella assembly protein FlgT.
  
    0.526
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 
 0.516
SO_4599
Ribonuclease T2; Belongs to the RNase T2 family.
   
    0.516
SO_3458
Protein of unknown function DUF416.
  
    0.467
SO_3085
Predicted periplasmic protein.
 
    0.461
yqcA
tRNA pseudouridine synthase C-associated flavoprotein YqcA.
  
 
  0.455
SO_0188
TIGR03032 family protein.
   
    0.453
degQ
Periplasmic serine protease DegQ; Belongs to the peptidase S1C family.
   
 
 0.433
SO_3084
Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain.
       0.427
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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