Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3085Predicted periplasmic protein. (192 aa)    
Predicted Functional Partners:
tesA
Multifunctional thioesterase/protease/lysophospholipase L1 TesA.
  
 
 0.826
gpS
Mu phage tail fiber protein GpS.
  
 
 0.707
SO_3086
Uncharacterized protein.
       0.682
SO_0306
Outer membrane protein COG4775 family.
  
 
 0.681
gpE
Mu phage large terminase subunit GpE.
   
    0.582
gpE-2
Mu phage large terminase subunit GpE.
   
    0.582
SO_0497
Serine/threonine protein kinase.
 
   
 0.576
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.569
SO_3084
Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain.
     
 0.560
speD
S-adenosylmethionine decarboxylase SpeD.
  
     0.520
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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