Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3092Transmembrane protein in aerotolerance operon. (197 aa)    
Predicted Functional Partners:
batA
VWR domain protein in aerotolerance operon BatA.
 
    0.961
batD
Periplasmic protein of unknown function in aerotolerance operon BatD.
 
  
 0.958
batB
TPR domain protein in aerotolerance operon BatB.
 
  
 0.957
SO_3091
Protein of unknown function DUF58 in aerotolerance operon.
 
    0.904
SO_3096
RNA polymerase sigma factor ECF family 28; Belongs to the sigma-70 factor family. ECF subfamily.
       0.685
SO_3097
Anti-sigma factor.
       0.642
SO_3090
MoxR-like ATPase in aerotolerance operon.
 
  
 0.617
SO_4007
Uncharacterized protein.
  
     0.480
fadJ
Anaerobic fatty oxidation complex alpha subunit FadJ; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
       0.451
fadI
Anaerobic fatty oxidation complex beta subunit FadI; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
       0.451
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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