STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
batAVWR domain protein in aerotolerance operon BatA. (338 aa)    
Predicted Functional Partners:
SO_3092
Transmembrane protein in aerotolerance operon.
 
    0.962
batB
TPR domain protein in aerotolerance operon BatB.
    0.954
batD
Periplasmic protein of unknown function in aerotolerance operon BatD.
 
    0.954
SO_3091
Protein of unknown function DUF58 in aerotolerance operon.
 
    0.918
SO_3090
MoxR-like ATPase in aerotolerance operon.
 
    0.851
SO_3096
RNA polymerase sigma factor ECF family 28; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.588
SO_3097
Anti-sigma factor.
  
    0.588
cmoB
tRNA (5-methoxyuridine) 34 synthase CmoD; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
  
     0.463
cmoA
tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase CmoA; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
  
     0.450
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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