STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
batBTPR domain protein in aerotolerance operon BatB. (679 aa)    
Predicted Functional Partners:
batD
Periplasmic protein of unknown function in aerotolerance operon BatD.
 
 
 0.978
SO_3091
Protein of unknown function DUF58 in aerotolerance operon.
 
  
 0.959
SO_3092
Transmembrane protein in aerotolerance operon.
 
  
 0.957
batA
VWR domain protein in aerotolerance operon BatA.
    0.955
mxdB
Glycosyl transferase family 2 MxdB.
  
 
 0.835
SO_3090
MoxR-like ATPase in aerotolerance operon.
 
  
 0.822
alaS
alanyl-tRNA synthetase AlaS; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.815
htpG
Heat shock chaperone HtpG; Molecular chaperone. Has ATPase activity.
  
 0.813
SO_1064
WD-40 repeat lipoprotein.
    
 0.810
rpoB
DNA-directed RNA polymerase beta subunit RpoB; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.752
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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