STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3099Outer membrane long-chain fatty acid receptor FadL family. (440 aa)    
Predicted Functional Partners:
SO_3705
5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase.
   
  
 0.886
bamC
Beta barrel protein translocation lipoprotein component BamC; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.769
bamA
Beta barrel protein translocation component BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 
 0.698
plpD
Bifunctional outer membrane translocase / extracellular lipase PlpD.
  
 
 
 0.682
SO_1821
Outer membrane porin.
  
  
 0.657
SO_3275
Putative periplasmic protein.
 
    0.632
SO_0306
Outer membrane protein COG4775 family.
   
 
 0.607
sdaC
Serine uptake transporter SdaC.
  
  
 0.596
nupX
Nucleoside:proton symporter NupX; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.
   
  
 0.590
yiaD
Putative outer membrane lipoprotein YiaD.
   
  
 0.551
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.