STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3099Outer membrane long-chain fatty acid receptor FadL family. (440 aa)    
Predicted Functional Partners:
SO_3705
5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase.
   
  
 0.883
SO_1821
Outer membrane porin.
  
  
 0.809
ompK
Nucleoside-specific outer membrane porin OmpK.
  
  
 0.735
SO_3276
Outer membrane protein FadL family.
      
 0.730
SO_0572
enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.729
SO_4761
Protein of unknown function DUF2618.
      
 0.717
SO_3545
Outer membrane porin; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
     
 0.696
SO_3275
Putative periplasmic protein.
 
    0.639
sdaC
Serine uptake transporter SdaC.
  
  
 0.583
nupX
Nucleoside:proton symporter NupX; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.
   
  
 0.561
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.